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Additional file 5 of Data-driven and interpretable machine-learning modeling to explore the fine-scale environmental determinants of malaria vectors biting rates in rural Burkina Faso

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posted on 2021-06-30, 03:30 authored by Paul Taconet, Angélique Porciani, Dieudonné Diloma Soma, Karine Mouline, Frédéric Simard, Alphonsine Amanan Koffi, Cedric Pennetier, Roch Kounbobr Dabiré, Morgan Mangeas, Nicolas Moiroux
Additional file 5: Figure S5. Model evaluation plots for the abundance models. A1, A2, A3 are violin plots of the distribution of the residuals for the abundance models of respectively An. funestus, An. gambiae s.s. and An. coluzzii, by observed counts of bites (4 classes: 1 bite, 2–3 bites, 4–10 bites, > 10 bites). Black dots indicate the median value. B1, B2, B3 are observed vs. predicted number of bites/village/entomological surveys. The y-axis represents the sum of bites over the 8 sampling points/village/survey (4 points by village * 2 places (interior and exterior)) on a logarithmic scale. The absence of a dot indicates that no vector was collected. MAE = mean absolute error; n = number of observations. Overall, the plots A1, A2, A3 show that the models predicted well small observed counts of bites (1 bite, 2–3 bites) (cf. small MAEs, small residuals), which represent the vast majority of observations (high n). Larger counts (4–10 bites, > 10 bites) tended to be underestimated by the models, especially for An. funestus and An. gambiae s.s. However, large counts (> 10 bites) represented few observations (small n). The plots B1, B2, B3 confirm these observations, and additionally show that general trends of biting rates over time were well predicted by the models (lines of predicted abundance are generally close to lines of observed abundance).

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Expertise France Agence Nationale de la Recherche

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