12915_2021_1044_MOESM2_ESM.pdf (310.25 kB)
Additional file 2 of Very long intergenic non-coding (vlinc) RNAs directly regulate multiple genes in cis and trans
journal contribution
posted on 2021-05-21, 03:42 authored by Huifen Cao, Dongyang Xu, Ye Cai, Xueer Han, Lu Tang, Fan Gao, Yao Qi, DingDing Cai, Huifang Wang, Maxim Ri, Denis Antonets, Yuri Vyatkin, Yue Chen, Xiang You, Fang Wang, Estelle Nicolas, Philipp KapranovAdditional file 2: Supplemental Figure S1. UCSC Browser shot for the vlincRNA ID-1202 (Additional file 1: Supplemental Table S18) used in the RAT experiments. The vlincRNA (found on the minus strand) is antisense to RTP4 gene. K562 promoters are based on the “Chromatin State Segmentation by HMM from ENCODE/Broad” track. K562 nuclear polyA- RNAseq is based on the “Long RNA-seq from ENCODE/Cold Spring Harbor Lab” track. K562 nuclear polyA- CAGE is based on “RNA Subcellular CAGE Localization from ENCODE/RIKEN” track. The genomic strand is denoted as either (+) or (-). The gene RTP4 antisense to the vlincRNA is based on the UCSC Genes database. Zoom-in view of the boxed region in the panel (a) is shown in (b).
