Additional file 2 of Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding

Additional file 2: Figure S1. Distribution of SNPs across chromosomes and founders. Figure S2. Minor Allele Frequency among ~ 4500 global wheats and the NDM founders. Figure S3. Haplotype block length in founders and MAGIC lines. Figure S4. Distribution of Best Linear Unbiased Estimates (BLUEs) across 73 phenotypic measurements. Figure S5. Correlations between phenotypes in the 504 RILs. Figure S6. Comparison between genomic prediction using LASSO and ELNET and between genomic prediction based on SNPs and gene deletion scores. Figure S7. Association mapping of the Protein Yield Deviation (PYD) compound phenotype.