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Additional file 1 of SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data

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posted on 2021-09-23, 03:33 authored by N. M. Prashant, Nawaf Alomran, Yu Chen, Hongyu Liu, Pavlos Bousounis, Mercedeh Movassagh, Nathan Edwards, Anelia Horvath
Additional file 1: Supplementary Fig. 1. CCND1. Two-dimensional UMAP clusters of samples SRR10156296, SRR10156297 and SRR10156299 showing cells classified by type (left) and visualizing COSV57121427 in CCND1, which was seen primarily in neurons in all three samples. The intensity of the red color corresponds to the proportion variant reads) of the VAFRNA of the indicated somatic mutations in the corresponding cells of the neuroblastoma samples; green color indicates that all the reads (minR = 3) covering the position in the cell carried the reference nucleotide.

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McCormic Genomic and Proteomic Center, George Washington University

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