Additional file 1 of Chromosome-level assembly and analysis of Camelina neglecta: a novel diploid model for Camelina biotechnology research

Additional file 1: Fig. S1. Genome size estimation of C. neglecta genome using k-mer analysis with different k-mer lengths. (a) 17mer (b) 19-mer (c) 21-mer (d) 23-mer. Fig. S2. Divided collinear synteny blocks into sub1, sub2 and sub3 from top to bottom by each chromosome of C. neglecta. Fig. S3. The Ks distribution of the collinear synteny blocks in each chromosome of C. neglecta. Fig. S4. The synteny plot of this study and the two published C. neglecta genomes. Fig. S5. The collinearity of three C. neglecta genomes. Fig. S6. PacBio reads coverage at the inversion breakpoints assembled by Chaudhary et al. and our assembly on chromosome 2. Fig. S7. The Hi-C signal heatmap of the 4.2 Mb inversion region on chromosome 2 (extending 2.5 Mb on the left and right sides of the inversion region). Fig. S8. Verified the accuracy of the 9 large presence variations in the genome we assembled. Fig. S9. Binary vector, used for Agrobacterium-mediated in planta transformation of C. neglecta.