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Additional file 1 of CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes

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posted on 2021-08-18, 04:14 authored by Lélia Polit, Gwenneg Kerdivel, Sebastian Gregoricchio, Michela Esposito, Christel Guillouf, Valentina Boeva
Additional file 1: Figure S1. ChIP-seq density profiles for selected transcription factors in the K562 cell line as a function of gene expression. ENCODE data sets used: ENCSR492FKD (ZNF257), ENCSR271RRH (ZNF253), ENCSR121SPB (KLF10), ENCSR844JVU (TCFL5), ENCSR946BXO (BRCA1), ENCSR153HNT (STAG1), ENCSR549PVK (PATZ1), ENCSR017EJY (DLX4). Gene expression was assessed an average across two replicates: ENCFF928NYA and ENCFF003XKT [23].

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Fondation ARC pour la Recherche sur le Cancer Agence Nationale de la Recherche Institut National Du Cancer

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    BMC Bioinformatics

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    ChIP-seqOpen chromatinNormalizationDensity profilesGene expressionAlgorithmR package

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