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fluff example data
This is example data, these files only contain reads mapped to chromosome 1!
This data set was created as example data for fluff.
See http://fluff.readthedocs.org/.
The following data from Bing Ren's lab was downloaded from NCBI GEO:
GSM878616 H1 DNase
GSM878621 H1 DNase
GSM466732 H1 H3K27ac
GSM663427 H1 H3K27ac
GSM767341 H1_mesenchymal H3K27ac
GSM767342 H1_mesenchymal H3K27ac
GSM753425 H1_mesendoderm H3K27ac
GSM753426 H1_mesendoderm H3K27ac
GSM864035 H1_mesendoderm H3K27ac
GSM864799 H1_mesendoderm H3K27ac
GSM753429 H1_neuronal_progenitor H3K27ac
GSM767343 H1_neuronal_progenitor H3K27ac
GSM818031 H1_neuronal_progenitor H3K27ac
GSM896162 H1_neuronal_progenitor H3K27ac
GSM753427 H1_trophoblast H3K27ac
GSM753428 H1_trophoblast H3K27ac
GSM864800 H1_trophoblast H3K27ac
FASTQ files were mapped to hg19 using bwa mem. Replicates were merged and all reads on chr1 were selected, and subsampled to 25%.
This data set was created as example data for fluff.
See http://fluff.readthedocs.org/.
The following data from Bing Ren's lab was downloaded from NCBI GEO:
GSM878616 H1 DNase
GSM878621 H1 DNase
GSM466732 H1 H3K27ac
GSM663427 H1 H3K27ac
GSM767341 H1_mesenchymal H3K27ac
GSM767342 H1_mesenchymal H3K27ac
GSM753425 H1_mesendoderm H3K27ac
GSM753426 H1_mesendoderm H3K27ac
GSM864035 H1_mesendoderm H3K27ac
GSM864799 H1_mesendoderm H3K27ac
GSM753429 H1_neuronal_progenitor H3K27ac
GSM767343 H1_neuronal_progenitor H3K27ac
GSM818031 H1_neuronal_progenitor H3K27ac
GSM896162 H1_neuronal_progenitor H3K27ac
GSM753427 H1_trophoblast H3K27ac
GSM753428 H1_trophoblast H3K27ac
GSM864800 H1_trophoblast H3K27ac
FASTQ files were mapped to hg19 using bwa mem. Replicates were merged and all reads on chr1 were selected, and subsampled to 25%.
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