pcbi.1011655.s006.tif (8.78 MB)
r20 of different latent dimensions of VAE.
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posted on 2023-11-27, 19:10 authored by Hoda Akl, Brooke Emison, Xiaochuan Zhao, Arup Mondal, Alberto Perez, Purushottam D. DixitThe average Pearson correlation coefficient between frequencies of top 20 amino acid combination of order n (x-axis) averaged across different combinations (y-axis) for VAE model trained with different latent dimensions K (legend). Each subplot represents a different protein from left to right: BPTI, DHFR, P53, EGFR, MTOR.
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unlike current methodsstable 3d structuremodeling moderately sizedlow sequence coverageinformative latent spacecorresponding natural ensemblesamino acid covariationgenerative nonlinear tensoraccurate generative modeldiv >< pprotein sequence familiesprotein familiesgenerative modelsprotein scientistsrelated obstacleslarge proteinsimportant toolfactorization engineers alike
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