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Comparison of 500 bp read performance on databases composed of genera that have at least 10 example sequences (well-represented genera) and genera which have highly similar sequences (Genera with one CD-HIT cluster).

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posted on 2013-02-20, 08:14 authored by Yemin Lan, Qiong Wang, James R. Cole, Gail L. Rosen

While the database with the highly similar genera has about the same performance as the original, the database with the well-represented genera performs about 10% better, in terms of f-measure.

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    500bpdatabasescomposedgenera10sequencescd-hit

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