pone.0279280.g002.tif (385.51 kB)
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posted on 2022-12-16, 18:26 authored by Xiaohui Zou, Marcus Nguyen, Jamie Overbeek, Bin Cao, James J. DavisWorkflow for the study.
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used nucleotide 6public archives existincluding hypothetical proteinsfold cross validationclassifying holdout sequencesimportant genetic elementsplasmid subsequences 5kbbacterial genome sequencesxlink "> plasmidsrandomly selected chromosomalcontigs comprising 10neural network modelneural networkbacterial plasmidencoding sequencesmobile elementsmany contigsplasmid originidentifying plasmidvoting strategytraining setstudy providesstraightforward approachsequence alignmentpatric databaseoutperforming existingmodel accuracymethods testedlogistic regressionlength achieveddraft formclassify chromosomalbox methodsbest performanceaverage accuracyantimicrobial resistance654 plasmids 177
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