pcbi.1009254.s002.png (74.4 kB)
Whole-genome assembly contigs aligned to GRCh38 in each of the 8 selected loci.
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posted on 2021-08-03, 17:36 authored by Jia-Yuan Zhang, Hannah Roberts, David S. C. Flores, Antony J. Cutler, Andrew C. Brown, Justin P. Whalley, Olga Mielczarek, David Buck, Helen Lockstone, Barbara Xella, Karen Oliver, Craig Corton, Emma Betteridge, Rachael Bashford-Rogers, Julian C. Knight, John A. Todd, Gavin BandEach row represents one local contig extracted from the draft whole-genome assembly (Fig 1A) by alignment to GRCh38 using minimap2 (Methods). The x axis reflects GRCh38 coordinates across each of the selected regions (Table 1).
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alignment approachesOxford NanoporeGRCh 38.10 kbassemblyHV 31.system gene regionsT cell receptor regionskiller-cell immunoglobulin-like rec...long-read sequencing platformsleukocyte antigenT cell receptorsimmunoglobulin regionsbase-level error ratesmapping techniquescore geneshaplotype variationgenomic regions encodingCD 14association studieslong-read sequencingshort-read sequencingsequence DNA
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