pgen.1010153.s001.tif (2.1 MB)
Synteny between the genome assemblies of four Eutypa lata isolates represented as circos plots.
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posted on 2022-04-01, 17:35 authored by Cristobal A. Onetto, Mark R. Sosnowski, Steven Van Den Heuvel, Anthony R. BornemanSynteny blocks are coloured based on the reference sequence and query assembly is represented in grey. Query contigs have been ordered based on synteny length to reference. Contig IDs are labelled A) Genome synteny between E. lata isolate MA101 and isolate 511–17 and B) E. lata isolate MA101 and isolate TAS7. Repeat elements neighbouring (< 2 kb) synteny breakpoints are shown, excluding repeats located in contig ends. C) Genome synteny between isolates TAS7, B003, MA101 and 511–17.
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secondary metabolite clusterspotentially host genotypesimportant disease causedhost cell wallglobal wine industrygenomic regions affectedgeneralist ascomycete fungusextensive gene flowdiv >< pdifferent geographic locationsvitis vinifera potential locus associatedaustralian wine industrysuggesting recent adaptationeutypa lata lata recent growthgenes associatedforty australianeutypa diebacke sexual recombinationselective sweepsreveals evidencepopulation sizepopulation genomicspopulation expansionnutrient acquisitionmycelia recoveryintraspecific differencesgenome sequencinggenome evolutiongenetic diversitydrug resistancecomparative genomicsabiotic factors
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