PlotScaffolds_1.tif (53.78 kB)

Small Compositionally non-homogenous regions in scaffolds of Chalara fraxinea assembly TGAC 1

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posted on 24.05.2013, 16:14 by Dan MacLean

Scaffolds of > 250 Kbp from Chalara fraxinea TGAC assembly 1 at https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1

were examined using IsoPlotter v2.3 (Eran Elhaik and Dan Graur doi:10.1093/nar/gkq532) to identify compositionally non-homogenous domains. Domain size of 3008 was used. 

Scaffold key from top to bottom:

Cf746836_TGAC_s1v1_scaffold_945
Cf746836_TGAC_s1v1_scaffold_1167
Cf746836_TGAC_s1v1_scaffold_1170
Cf746836_TGAC_s1v1_scaffold_1201
Cf746836_TGAC_s1v1_scaffold_1232
Cf746836_TGAC_s1v1_scaffold_1249
Cf746836_TGAC_s1v1_scaffold_1479
Cf746836_TGAC_s1v1_scaffold_1507
Cf746836_TGAC_s1v1_scaffold_1550
Cf746836_TGAC_s1v1_scaffold_1659

 

White regions are significant compositionally non-homogenous. 

 

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