pone.0202695.g001.tif (2.77 MB)

Phylogenetic tree highlighting the position of fungal isolates and closely related type strains.

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posted on 2018-08-30, 17:41 authored by Sophie C. Brandt, Bernhard Ellinger, Thuat van Nguyen, Quyen Dinh Thi, Giang van Nguyen, Christiane Baschien, Andrey Yurkov, Richard L. Hahnke, Wilhelm Schäfer, Martin Gand

The tree comprising (a) Ascomycota and Zygomycota strains was inferred from 398 aligned characters and (b) Aspergillus and Penicillium strains rooted with Talaromyces strains was inferred from 393 aligned characters of the internal transcribed spacer 1, the 5.8S rRNA gene and the internal transcribed spacer 2, under the maximum likelihood (ML) and maximum parsimony (MP) criterion. The branches are scaled in terms of expected number of substitutions per site. Numbers adjacent to the branches are support values from 1,000 ML bootstrap replicates (left) and from 1,000 MP bootstrap replicates (right) if larger than 60%. Numbers in parentheses represent the number of strains in this taxon *, nomenclature of Trichoderma strains was verified by using TrichOKEY 2. The uncollapsed trees can be found in the S3 and S4 Figs. Habitats are wood (dark brown), soil (light brown), rice straw (dark orange), fruits (light orange), oil environment (light green-blue), hot springs (light blue), insects (blue), shrimp shells (dark blue) and crab shells (black-blue).