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Nucleotide changes in CVB3 infected Huh7 cells.

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posted on 2024-03-08, 18:21 authored by Lonneke V. Nouwen, Martijn Breeuwsma, Esther A. Zaal, Chris H. A. van de Lest, Inge Buitendijk, Marleen Zwaagstra, Pascal Balić, Dmitri V. Filippov, Celia R. Berkers, Frank J. M. van Kuppeveld

13C glucose isotope tracing study of mock and CVB3 infected Huh7 R19 cells (three replicates; one experiment; MOI 5). The cells were infected, lysed at 5,8 or 16 hpi and measured by LC-MS to identify metabolites. One sample was removed from analysis (one replicate of 5 hpi CVB3), because of a technical defect. A) The relative contributions of the different labelings are shown for eight representative nucleotides: ADP, ATP, UDP, UTP, CDP, CTP, GDP, GTP. B) The absolute level of N-carbanoyl-aspartate in Mock and CVB3 infected samples over time. The p-values of the absolute metabolite levels A) and B) were calculated using linear mixed effect models with an interaction of time and treatment and a random effect of replicate. For N-carbamoyl-aspartate, a normal distribution of the residuals could not be assumed and therefore a non-parametric linear mixed effect model with an interaction of time and treatment and a random effect of replicate was performed. Afterwards, a contrast analysis was done to calculate the p-values between specific groups. *p < 0.05, **p < 0.01, ***p < 0.001.

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