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Investigation of factors influencing computational requirements to run Jorg.

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posted on 2021-05-07, 17:39 authored by Lauren M. Lui, Torben N. Nielsen, Adam P. Arkin

Data shown is from 10 iterations of Jorg on bins generated from the ZymoBIOMICS Microbial Community Standard. Reads were assembled with SPAdes and contigs were binned using MetaBat 2. The reads were subsampled and the starting size of the interleaved reads file for baiting was 1.5Gb. Run time is dominated by the baiting process for bins with starting size of approximately 1Mbp or less. For larger bins, the run time is dominated by the assembly by MIRA.

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