Gkl205f2.jpg (20.56 kB)
Input form for advanced users
figure
posted on 2011-12-30, 16:17 authored by J. Waldispühl, Bonnie Berger, Peter Clote, Jean-Marc SteyaertCopyright information:
Taken from "transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels"
Nucleic Acids Research 2006;34(Web Server issue):W189-W193.
Published online 14 Jul 2006
PMCID:PMC1538872.
© The Author 2006. Published by Oxford University Press. All rights reserved
The user can set bounds on the number of TM strands, bounds on strand length, shear number (inclination to plane), bounds on lengths of periplasmic and extra-cellular loops. In addition to choosing from a pull-down menu of a variety of hydrophobicity scales, the user can upload customized contact energies.