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Final result UMAP-Gaussian mixture model-monophyletic cluster maximization: Full algorithm UMAP-GMMEM-MCIM results for the OMP phylogeny are shown by color and number.

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posted on 2024-01-11, 18:32 authored by Adrian N. Ortiz-Velez, Jeet Sukumaran, Ryin Rouzbehani, Scott T. Kelley

Labels with an integer are clades that clustered with UMAP-GMMEM. Labels with a floating-point number are clades that needed refinement via clade identification of the resolved para(poly)-phyletic UMAP-GMMEM cluster.

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    rna viral genomesresolving annotation errorsprotein sequences providesouter membrane porinsgaussian mixture modelscurated protein familiesautomatically group sequencesad hoc means like procedurefunctional clustering baseddifferent protein familiesautomated phylogenetic identificationdiv >< pautophy resolved misannotationsphylogenetic clusters generatedpowerful meansphylogenetic treesphylogenetic analysisdifferent ratesbased thresholdsseveral wellresolve nonnuclear receptorsmultiple databasesmonophyletic groupsincluding pfamdone manuallydefined valuesbroad rangeamong phylogeniesalso applied

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