pone.0291801.g004.tif (589.59 kB)
Fig 4 -
figure
posted on 2024-01-11, 18:32 authored by Adrian N. Ortiz-Velez, Jeet Sukumaran, Ryin Rouzbehani, Scott T. KelleyGMMEM Lowest BIC: Visualization of the lowest scored model identified by the GMMEM indicated by color on the (A) UMAP plot showing the best fit model’s 16 Gaussian peaks (B) Phylogenetic tree colored and labeled for their Gaussian peaks from the best fit model. The numbers correspond to each of the Gaussian peaks in the GMMEM model relating to the tree. Note that clusters 0, 1, 4, 10, 21, and 23, are polyphyletic and there is also a deep branching separation in cluster in 10.
History
Usage metrics
Categories
Keywords
rna viral genomesresolving annotation errorsprotein sequences providesouter membrane porinsgaussian mixture modelscurated protein familiesautomatically group sequencesad hoc means like procedurefunctional clustering baseddifferent protein familiesautomated phylogenetic identificationdiv >< pautophy resolved misannotationsphylogenetic clusters generatedpowerful meansphylogenetic treesphylogenetic analysisdifferent ratesbased thresholdsseveral wellresolve nonnuclear receptorsmultiple databasesmonophyletic groupsincluding pfamdone manuallydefined valuesbroad rangeamong phylogeniesalso applied
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC