pntd.0009707.g003.tif (657.47 kB)
Evidence of a reassortment event in Hantaan virus (HTNV) on patient ROKA16-10 in Pocheon-si.
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posted on 2021-09-28, 17:37 authored by Seungchan Cho, Won-Keun Kim, Jin Sun No, Seung-Ho Lee, Jaehun Jung, Yongjin Yi, Hayne Cho Park, Geum-Young Lee, Kyungmin Park, Jeong-Ah Kim, Jongwoo Kim, Jingyeong Lee, Daesang Lee, Dong Hyun Song, Se Hun Gu, Seong Tae Jeong, Jin-Won Song(A) The Bootscan plot was based on a pairwise distance model using the RDP4 algorithm. Green and blue colors represent the comparison of ROKA16-10 (Pocheon-si) to Pyeongtaek-si and Pocheon-si groups, respectively. (B-D) Phylogenetic trees are shown for the L, M, and S segments of the reassortant ROKA16-10 using Bayesian inference in BEAST (v1.10.4).
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putative infection sitespotential infection sitesperformed multiplex pcrgenetic configuration compatibleapodemus agrarius urinary genome detectionhighly endemic areaspartial genome sequencesreservoir host capturedcollected four urinehtnv genomes revealsgenome sequencesviral genomesendemic regionszoonotic htnvxlink ">urine specimensurine enabledserum specimensresults suggestrenal syndromephylogeographically linkingphylogeographic tracingphylogenetic analyseslow amountskorea armyinfectious particlesinfected rodentsincluding urinehemorrhagic feverhantaan virusgeneration sequencingclinical htnvbased nextaerosolized excreta
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