pntd.0008991.g002.tif (3.04 MB)
Circular representation of the S. Typhimurium UGA14 genome including the chromosome and four plasmids.
figure
posted on 2021-02-01, 18:32 authored by Jessica Z. Kubicek-Sutherland, Gary Xie, Migun Shakya, Priya K. Dighe, Lindsey L. Jacobs, Hajnalka Daligault, Karen Davenport, Loreen R. Stromberg, Zachary R. Stromberg, Qiuying Cheng, Prakasha Kempaiah, John Michael Ong’echa, Vincent Otieno, Evans Raballah, Samuel Anyona, Collins Ouma, Patrick S. G. Chain, Douglas J. Perkins, Harshini Mukundan, Benjamin H. McMahon, Norman A. DoggettThe outermost four circles indicate start sites of genes. Starting on the outside, circles 1–2 consist of forward-strand gene products; circles 3–4 consist of reverse-strand gene products (colors represent the following categories: CDS, blue; tRNA, brown; rRNA; magenta; other, grey); circle 5 shows AMR genes; circle 6 shows mobile gene elements (insertion sequences and prophage genes); circles 7–9 show homologous regions of blastn search against near neighbors in GenBank (highly similar regions are shown in darker color); circle 8 shows GC content; circle 9 shows GC bias (G-C/G+C where green indicates values >1 and purple <1).
