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CVB3 infection of triggers increases in purine and pyrimidine metabolites in HeLa cells.

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posted on 2024-03-08, 18:21 authored by Lonneke V. Nouwen, Martijn Breeuwsma, Esther A. Zaal, Chris H. A. van de Lest, Inge Buitendijk, Marleen Zwaagstra, Pascal Balić, Dmitri V. Filippov, Celia R. Berkers, Frank J. M. van Kuppeveld

13C-glucose isotope tracing study in mock- and CVB3-infected HeLa R19 cells (MOI 5, three replicates; one of three representative experiments is shown). Cells were infected, lysed at 2,4,6 or 8 hpi and measured by LC-MS to identify metabolites and quantify the different isotopologues. The different isotopologues are not distinguished in this Figure. A) Heatmap of log2 fold changes of the indicated metabolites between CVB3- and mock-infected cells. Log2 fold changes are calculated based on the mean of three replicates. B) Absolute peak areas of representative nucleotide monophosphates, nucleosides and nucleobases in mock and CVB3-infected cells. C) Absolute peak areas of dihydroorotate and N-carbamoylaspartate in mock and CVB3-infected cells. The p-values were calculated using linear mixed effect models with an interaction of time and treatment and a random effect of replicate. A rank transformation on the data was performed to ensure a normal distribution of the residuals. For hypoxanthine and guanosine, a normal distribution of the residuals could not be assumed and therefore a non-parametric linear mixed effect model with an interaction of time and treatment and a random effect of replicate was performed. Afterwards, a contrast analysis was done to calculate the p-values between specific groups. *p < 0.05, **p < 0.01, ***p < 0.001.

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