pgen.1009269.s018.tif (151.8 kB)
A t-SNE plot after only filtering out isolates with less than two DBLα types.
figure
posted on 2021-02-25, 18:27 authored by Gerry Tonkin-Hill, Shazia Ruybal-Pesántez, Kathryn E. Tiedje, Virginie Rougeron, Michael F. Duffy, Sedigheh Zakeri, Tepanata Pumpaibool, Pongchai Harnyuttanakorn, OraLee H. Branch, Lastenia Ruiz-Mesía, Thomas S. Rask, Franck Prugnolle, Anthony T. Papenfuss, Yao-ban Chan, Karen P. DayWhilst the clustering is less defined than Fig 2B, the overall grouping by country is still clearly evident suggesting that the result is robust to the commonly used practice of filtering out isolates with less than 20 DBLα types.
(TIF)
History
Usage metrics
Categories
Keywords
variant surface antigenpopulation structuresurface antigen variantsPfEMP 1 DBL α domainDBL α type diversityvar genes encodingencodes PfEMP 1var multigene familymalaria parasite Plasmodium falciparumPlasmodium Laverania speciesimmunodominant surface antigensDBL α typesvariant surface antigen-encoding genesHIVsurveillance
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC