publication_data_CalCEN_v1.0.0_20201230.tar.gz (961.6 MB)

publication_data_CalCEN_v1.0.0_20201230.tar.gz

dataset

posted on 2021-01-03, 17:04 authored by Matthew O'MearaMatthew O'Meara, Teresa O'Meara

Data for

TR O'Meara, MJ O'Meara, M Sphere, 2020

DeORFanizing Candida albicans Genes using Co-Expression

Code available at

http://github.com/momeara/CalCEN

Candida Albicans Co-Expression Network (CalCEN) version 1.0.0

Files

chromsome_features.tsv

- Candida albicans SC5314chromsome features collected from Candida Genome Database 12-Jun 2018

genes.tsv

- Curated set of 6226 genes use in this study

expression_runs.tsv

- Curated set of RNA-seq runs used in this study

estimated_expression.tsv

- gene by RNA-seq run expression levels

CalCEN_network.tsv

- Co-expression network

blastp_network.tsv

- blastp sequence similarity network

sac_gene.tsv

- genetic associations between orthologous Sac genes Network

sac_gene.tsv

- physical protein-protein interaction between orthologous Sac genes Network

yeast_net_network.tsv

- YeastNet between orthologous Sac genes network

go_annotations.tsv

- GO annotations from Candida Genome Database collected 12-Jun 2018

gba_summary.tsv

- Summary of guilt-by-association gene-function prediction

History