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fluff example data

dataset
posted on 14.03.2016, 11:23 by Simon J. Van Heeringen
This is example data, these files only contain reads mapped to chromosome 1!

This data set was created as example data for fluff.
See http://fluff.readthedocs.org/.
The following data from Bing Ren's lab was downloaded from NCBI GEO:

GSM878616    H1    DNase
GSM878621    H1    DNase
GSM466732    H1    H3K27ac
GSM663427    H1    H3K27ac
GSM767341    H1_mesenchymal    H3K27ac
GSM767342    H1_mesenchymal    H3K27ac
GSM753425    H1_mesendoderm    H3K27ac
GSM753426    H1_mesendoderm    H3K27ac
GSM864035    H1_mesendoderm    H3K27ac
GSM864799    H1_mesendoderm    H3K27ac
GSM753429    H1_neuronal_progenitor    H3K27ac
GSM767343    H1_neuronal_progenitor    H3K27ac
GSM818031    H1_neuronal_progenitor    H3K27ac
GSM896162    H1_neuronal_progenitor    H3K27ac
GSM753427    H1_trophoblast    H3K27ac
GSM753428    H1_trophoblast    H3K27ac
GSM864800    H1_trophoblast    H3K27ac

FASTQ files were mapped to hg19 using bwa mem. Replicates were merged and all reads on chr1 were selected, and subsampled to 25%.

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