Riverscape genomics clarifies neutral and adaptive evolution in an Amazonian characin fish (Triportheus albus)

dataset

posted on 2022-02-07, 02:26 authored by Abbie Hay, Jonathan SandovalJonathan Sandoval, Georgina M. Cooke, Ning L. Chao, Luciano B. Beheregaray

Talbus_98_15251SNP.str

Genotypes for 94 Amazonian characin fish (Triportheus albus) individuals (and four replicates) at 15,251 biallelic SNP loci (from the same number of ddRAD loci) in structure format.

Talbus_98_15251SNP.vcf

VCF with genotypes for 94 Amazonian characin fish (Triportheus albus) individuals (and four replicates) at 15,251 biallelic SNP loci (from the same number of ddRAD loci).

Allelefreq_9Sites_A5A6merged.txt

Standardized allele frequency of 9 sites (A5 and A6 merged) for 15,251 SNPs

5Env_IBD_Omega_9Sites_noA6.txt

Table with five environmental variables (collected in-situ), synthetic coordinates of geographic distance and omega matrices for each of the nine sampling sites (not A6) in the Amazon Basin.

omega_mat.out

Omega matrix of population covariance across locality allele frequencies (Ω ) calculated with BayPass