Version 3 2019-03-28, 07:06Version 3 2019-03-28, 07:06
Version 2 2019-03-23, 09:00Version 2 2019-03-23, 09:00
Version 1 2019-01-21, 06:14Version 1 2019-01-21, 06:14
dataset
posted on 2019-03-28, 07:06authored byDian-Chang Zhang
Golden pompano (Trachinotus ovatus), belong to the Carangidae
family,
are important aquaculture fish in China due to their economic value. To aid genomic research in
this species, a high-quality
reference genome of the golden pompano would be a very useful resource. We produced 106 Gb cleaned Illumina data from paired-end and mate-pair
libraries. Another 16.9 Gb long reads data on
Pacbio platform were also sequenced. By combination of Illumina and Pacbio
reads, we generated a 648 Mb female pompano
assembly with a contig N50 size of 1.8 Mb and a scaffold
N50 size of 5.05 Mb. With 114.8 Gb cleaned Hi-C data, 99.4% of the
total assembled bases were anchored into 24 chromosomes. This assembly would promote the scientific research and aquaculture related to this fish.