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WGS sequencing, assembly, and annotation

dataset

posted on 2024-06-11, 05:12 authored by Broad Institute

The Broad Institute sequenced the genome of Fusarium oxysporum f. sp. lycopersici, strain 4287 (race 2, VCG 0030) at 6X coverage using whole genome shotgun (WGS) sequencing. The assembly size is 61.36 Mb which include 15 chromosomes and 117 unplaced scaffolds. The strain is available from the Fungal Genetics Stock Center (FGSC 9935) and NCAUR/USDA (NRRL 34936).

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2007-04-09

Theme

Non-geospatial

ISO Topic Category

biota

Ag Data Commons Group

ARS Culture Collection

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA18813

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA18813 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Fusarium oxysporum f. sp. lycopersici 4287 4287 eEukaryotes

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