DATASET
Ba_haplotype.csv (55.03 kB)
DATASET
Ba_vast_matrix.csv (4.57 MB)
DATASET
Bp_haplotype.csv (102.78 kB)
DATASET
Bp_vast_matrix.csv (71.06 MB)
DATASET
Ec_haplotype.csv (99.18 kB)
DATASET
Ec_vast_matrix.csv (202.59 MB)
DATASET
Ft_haplotype.csv (27.94 kB)
DATASET
Ft_vast_matrix.csv (2.49 MB)
DATASET
Yp_haplotype.csv (111.49 kB)
DATASET
Yp_vast_matrix.csv (6.28 MB)
DATASET
Truncated_Yp_loci.csv (0.45 kB)
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Variant Site Strain Typer (VaST): Efficient strain typing using a minimal number of variant genomic sites
Version 3 2017-10-26, 08:35
Version 2 2017-10-26, 08:33
Version 1 2017-10-26, 08:22
dataset
posted on 2017-10-26, 08:22 authored by Tara FurstenauTara Furstenau, Jill Cocking, Jason W. Sahl, Viacheslav Y. FofanovThis repository contains the matrices used to build the minimum spanning sets for Yersenia pestis, Bacillus anthracis, Escherichia coli, Burkholderia pseudomallei, and Francisella tularensis. The target sites identified for resolving each strain complex is also provided in the haplotype files. The loci used for the truncated, experimentally-validated panel are also listed.
