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The genome assembly and gene annotation of oat.
dataset
posted on 2021-06-01, 07:14 authored by Yan Li, Aymeric Leveau, Qiang Zhao, Qi Feng, Hengyun Lu, Jiashun Miao, Zheyong Xue, Azahara C. Martin, Eva Wegel, Jing Wang, Anastasia Orme, Maria-Dolores Rey, Miroslava Karafiátová, Jan Vrána, Burkhard Steuernagel, Ryan Joynson, Charlotte Owen, James Reed, Thomas Louveau, Michael Stephenson, Lei Zhang, Xuehui Huang, Tao Huang, Danling Fan, Congcong Zhou, Qilin Tian, Wenjun Li, Yiqi Lu, Jiaying Chen, Yan ZhaoYan Zhao, Ying Lu, Chuanrang Zhu, Guy Polturak, Rebecca Casson, Lionel Hill, Graham Moore, Rachel Melton, Neil Hall, Brande B H Wulff, Jaroslav Doležel, Tim Langdon, Bin Han, Anne OsbournThe data include a summary of the genome assembly and annotation of oat. Chromosome-level genome assembly and scaffold-level genome assembly are both can be found in this dataset. Genome annotation files are provided in .fa file, .gff3 file and .cds file. The functional annotation of genes in oat is using by interpro. Average read counts of genes in six difference tissues which include roottip, root, leaf, shoot, panicle adnd spikelet are listed in the dataset. By using genome assembly, the accurate prediction of transcription factor and annotation of FL_LTR is processed. Please see the README.txt file for the detailed information.
