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TARGET-seq_raw_counts_matrix.txt.gz (141.05 MB)

TARGET-seq+ transcriptome raw counts

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posted on 2024-06-24, 11:44 authored by Niels Asger JakobsenNiels Asger Jakobsen, Sven Turkalj, Paresh Vyas

Raw RNA counts for TARGET-seq+ single-cell whole transcriptome data from bone marrow samples from 9 cases with clonal hematopoiesis and 4 control samples. For details on cell sorting and the TARGET-seq+ protocol see the methods section of the manuscript. Cells are named with their plate and well IDs and the subject ID. Empty wells (no-cell controls) are named "blank". 


Reads were mapped using the GENCODE v38 reference gene annotation with ERCC transcripts.

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    Radcliffe Department of Medicine

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