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Data-set for Lachlan et al. 2018
Version 2 2018-05-31, 23:13
Version 1 2018-05-31, 23:08
dataset
posted on 2018-05-31, 23:13 authored by Robert LachlanRobert Lachlan, Oliver RatmannOliver RatmannDatabase of measured swamp sparrow (Melospiza georgiana) songs from six populations of swamp sparrows.
Database is in Luscinia format (https://rflachlan.github.io/Luscinia/, version 2.17.11.22.01). To access: download/install Luscinia (jar file attached); download the file lusciniaproperties (and place it in the same directory as Luscinia.jar). Download/unzip the database; open Luscinia, use "Find" to locate SwampSparrow.luscdb file, and Log-In.
Details of recording methods found in database.
The output of song analysis is included.
To run song analysis as in paper:
(1) Select Analysis from the main menu.
(2) Load Scheme "ConformistPaperAll"
(3) Select "Select one syllable per phrase"
(4) Click Next Step; Select Computer Comparison By Time Warping; Select Next Step again.
(5) Correct DTW preferences should have been loaded if lusciniaproperties was downloaded. If not, please see manuscript. Click NextStep to run analysis.
(6) Select Dendrogram (Options: use raw dissimilarity matrix; UPGMA) and Geographical Analysis (Options: Level to compare: Populations). Select By Syllable under Units to Analyze. Click Next Step.
(7) Export data from dendrogram (Validation stats; Classification stats) and geographic analysis tabs to spreadsheet format.
The output of the ABC analysis of song frequencies is to be found in the ConformityModelResults160 folder (along with ReadMe).
