DATASET
DATASET
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Single-cell RNA-seq data from Smart-seq2 sequencing of FACS sorted cells (v2)
Version 8 2018-09-20, 17:47Version 8 2018-09-20, 17:47
Version 7 2018-03-27, 19:58Version 7 2018-03-27, 19:58
Version 6 2018-03-23, 18:08Version 6 2018-03-23, 18:08
Version 5 2018-03-22, 19:06Version 5 2018-03-22, 19:06
Version 4 2018-03-09, 19:35Version 4 2018-03-09, 19:35
Version 3 2018-02-20, 22:05Version 3 2018-02-20, 22:05
Version 2 2018-02-16, 20:02Version 2 2018-02-16, 20:02
Version 1 2018-01-27, 00:58Version 1 2018-01-27, 00:58
dataset
posted on 2018-09-20, 17:47 authored by Tabula Muris Consortium, James WebberJames Webber, Joshua BatsonJoshua Batson, Angela PiscoGene-count tables for FACS sorted cells sequenced with Smart-Seq2 from 20 organs of 7 mice. Cells are grouped by tissue of origin.
Includes data for 53,760 cells, 44,879 of which passed a QC cutoff of at least 500 genes and 50,000 reads.
Cell annotations using the Cell Ontology [1] controlled vocabulary are in a separate csv.
This differs from v1 by renaming "Brain_Neurons" --> "Brain_Non-microglia" to be consistent with the manuscript.
Update 2018-09-20: Updated annotations to latest manuscript version
Update 2018-02-16: Separated Diaphragm cells from Muscle cells, and Aorta cells from Heart cells.
Update 2018-02-20: Aorta and Heart erroneously contained Diaphragm and Muscle data, and have now been corrected.
Update 2018-03-09: Renamed tissues for nomenclature standards:
- "Colon" --> "Large_Intestine"
- "Muscle" --> "Limb_Muscle"
- "Mammary" --> "Mammary_Gland"
- "Brain_Microglia" --> "Brain_Myeloid"
- "Brain_Non-microglia" --> "Brain_Non-Myeloid"
Update 2018-03-22: Renamed subtissues:
- tissue: Heart, subtissue: ? --> tissue: Heart, subtissue: Unknown
- tissue: Skin, subtissue: NA --> tissue: Skin, subtissue: Telogen
Update 2018-03-23: Removed row numbers in first column of metadata_FACS.csv
Update 2018-03-27: Added tissue tSNEs and cluster ids
[1] http://purl.obolibrary.org/obo/cl.owl
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Chan Zuckerberg Biohub
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Mus musculusrna-seqsingle-cell rna-seqsingle-cell RNA-seqaortabladderbrainmicroglianeuroncolondiaphragmfatheartkidneyliverlungmammarymarrowmusclepancreasskinthymustonguetrachealimb musclemammary glandlarge intestinebrain myeloidbrain non-myeloidAnimal Cell and Molecular BiologyBioinformaticsCell BiologyMolecular Biology
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