CAGE peaks expression (mm10 v3)

Version 3 2017-04-17, 08:00

Version 2 2017-04-17, 07:47

Version 1 2017-04-17, 06:45

dataset

posted on 2017-04-17, 08:00 authored by Imad AbugessaisaImad Abugessaisa

This folder contains CAGE peaks expression tables for the robust set of peaks.

mm10.fair+new_CAGE_peaks_phase1and2_ann.txt.gz - CAGE peak based table with annotated peaks for mouse samples (fairly remapped)
mm10.fair+new_CAGE_peaks_phase1and2_liftover_ann.txt.gz - CAGE peak based table with annotated peaks for mouse samples (all liftover)

mm10.fair+new_CAGE_peaks_phase1and2_tpm.osc.txt.gz - CAGE peak based expression table (RLE normalized) for mouse samples [see edgeR documentation for further details about normalization method]
mm10.fair+new_CAGE_peaks_phase1and2_counts.osc.txt.gz - CAGE peak based expression table for mouse samples
mm10.fair+new_CAGE_peaks_phase1and2_tpm_ann.osc.txt.gz - CAGE peak based expression table (RLE normalized) for mouse with annotation
mm10.fair+new_CAGE_peaks_phase1and2_counts_ann.osc.txt.gz - CAGE peak based expression table for mouse with annotation

Funding

FANTOM5 was made possible by a Research Grant for RIKEN Omics Science Center from MEXT to Yoshihide Hayashizaki and a Grant of the Innovative Cell Biology by Innovative Technology (Cell Innovation Program) from the MEXT, Japan to Yoshihide Hayashizaki and to the RIKEN Center for Life Science Technologies. This study is also supported by Research Grants from the Japanese Ministry of Education, Culture, Sports, Science and Technology through RIKEN Preventive Medicine and Diagnosis Innovation Program to Yoshihide Hayashizaki and RIKEN Centre for Life Science, Division of Genomic Technologies to Piero Carninci.

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Keywords

FANTOM5 Gene Expression (incl. Microarray and other genome-wide approaches)Genome Structure and Regulation Genomics

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