Syntenic gene lists for sorghum, both maize subgenomes, setaria italica, setaria viridis, oropetium, rice, and brachypodium. Initial homology search conducted with lastz. Syntenic regions identified using QuotaAlign (https://github.com/tanghaibao/quota-alignment). One to one gene pair identification performed using the method describe in Zhang et al 2017.
Please cite:
Zhang Y, Ngu DW, Carvalho D, Liang Z, Qiu Y, Roston RL, Schnable JC. (2017) “Differentially regulated orthologs in sorghum and the subgenomes of maize.” The Plant Cell doi: 10.1105/tpc.17.00354 bioRxiv preprint doi: 10.1101/120303