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Oat_aphid_Rhopalosiphum_padi_clone_bioinformatics
dataset
posted on 2023-11-10, 07:04 authored by Evatt ChirgwinEvatt Chirgwin, QIONG YANGQIONG YANG, Joshua ThiaJoshua Thia, PAUL UMINAPAUL UMINA, Wei Song, Xinyue GuXinyue Gu, PERRAN ROSSPERRAN ROSS, Shu-Jun WeiShu-Jun Wei, Ary HoffmannAry Hoffmann, Alexander GillAlexander GillRpadi_GCA_020882245.1_annots.gff: genome structure annotation results for Rhopalosiphum padi (NCBI accession: GCA_020882245.1)
Rpadi_GCA_020882245.1_exons.gff: exon annotation results for Rhopalosiphum padi (NCBI accession: GCA_020882245.1)
vars_bi_minq_mindp_miss_mac_all_snp.vcf: variant calling results for Rhopalosiphum padi individuals
01_01_Trim_reads.sh: shell script for the rawreads trimming analysis
01_02_Map_reads_aphid.sh: shell script for the rawreads mapping to the reference genome analysis
01_03_Variant_calling.sh: shell script for the SNP calling analysis
01_04_Genetic_analysis.R: R scripts for the genetic analysis
