Micronutrient supplementation affects DNA methylation signatures in male gonads with predicted intergenerational epigenetic inheritance involving the development of embryonic cells

dataset

posted on 2021-03-25, 09:40 authored by Takaya SaitoTakaya Saito

Three groups of Atlantic salmon were fed with graded levels of micronutrient supplementation. Gonad and liver samples were collected at final harvest stage. The samples were processed by two restriction enzymes, MspI and TaqI, for RNA-seq and RRBS.

It contains the following 13 Excel files with formatted and annotated RNA-seq and RRBS results.

1. DEGs for L2:L1

2. DEGs for L3:L1

3. DMCs and CpG sites for L2:L1

4. DMCs and CpG sites for L3:L1

5. DMCs by region for gonad L2:L1

6. DMCs by region for gonad L3:L1

7. DMGs for L2:L1

8. DMGs for L3:L1

9. DEG^DMCs for gonad

10. DEG^DMCs for liver

11. DEG^DMCs for G&L

12. common DMCs

13. common DMGs

Detailed descriptions of the data are found in the Additional File 1 of Saito et al., 2021.

History

Usage metrics

Keywords

RRBS Atlantic salmon farming RNA-seq Intergenerational inheritance DNA methylation Aquaculture Epigenetics (incl. Genome Methylation and Epigenomics)Gene Expression (incl. Microarray and other genome-wide approaches)Bioinformatics

Licence

CC BY 4.0

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM