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zfish_proj.tar.gz (6.43 GB)
Mesmerize volumetric zebrafish dataset
dataset
posted on 2021-06-08, 15:21 authored by Kushal KolarKushal Kolar, Marios ChatzigeorgiouMarios ChatzigeorgiouZebrafish volumetric calcium imaging dataset analyzed in Mesmerize and provided as a Mesmerize Project.
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decompress using pigz:
`pigz -dc zfish_proj.tar.gz | tar xf -`
If you cannot install pigz use tar, but it will be much slower:
`tar xvzf zfish_proj.tar.gz`
For information on Mesmerize please see:
https://github.com/kushalkolar/MESmerize
For information on how the dataset is organized please see:
http://docs.mesmerizelab.org/en/master/user_guides/general/misc.html#project-structure
Raw data was provided by Martin Haesemeyer from their paper: Haesemeyer M, Robson DN, Li JM, Schier AF, Engert F. A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish. Neuron. 2018 May 16;98(4):817-831.e6. doi: 10.1016/j.neuron.2018.04.013. Epub 2018 May 3. PMID: 29731253; PMCID: PMC5985529.
Please note: The Mesmerize dataset provided here is not related to the analysis from their paper. It is merely a basic re-analysis of the raw data that was used for their paper.