Meloidogyne group POInT data

Version 3 2019-10-29, 16:16

Version 2 2019-08-20, 19:40

Version 1 2019-08-19, 18:09

dataset

posted on 2019-10-29, 16:16 authored by Gavin ConantGavin Conant

1-3: Gene order files for the three triploid genomes:

• Meloidogyne_arenaria_POInT_geneorders.txt

• Meloidogyne_incognita_POInT_geneorders.txt

• Meloidogyne_javanica_POInT_geneorders.txt

4: The inferred ancestral gene order: Nematode_WGT_OptOrder.txt

5-8: 4 models of gene loss after triplication (Figure 2):

• WGT_Null_model.txt

• WGT_1Frac_model.txt

• WGT_1FracS_model.txt

• WGT_1FracS2_model.txt

9: The optimized phylogenetic topology, Nematode_WGT_OptTopo.tre

and

10: The set of orthology predictions from POInT:

ThreeSpp_WGT_1Frac_SingF_DSep_Top2_m2Opt2_postprobs.txt.

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