Jama et al Data from SCNA and gene pathway analysis

An MS Excel file with 12 tabbed sheets

1. SCNA-BAP1: SCNA data from Zhang 2021 of CN segments harbouring the BAP1 gene 

2. KEGG gene list: list of KEGG genes for Hippo pathway, Homologous recombination pathway and Non-Homologous End Joining pathway

3. SCNA -HIPPO: SCNA data from Zhang 2021 of CN segments harbouring Hippo pathway genes

4. SCNA-HR: SCNA data from Zhang 2021 of CN segments harbouring HR pathway genes

5. SCNA-NHEJ: SCNA data from Zhang 2021 of CN segments harbouring NHEJ pathway genes

6. TRUNCAL HIPPO: Truncal SCNA changes in Hippo pathway genes according to sample and fusion status

7. TRUNCAL HR: Truncal SCNA changes in HR pathway genes according to sample and fusion status

8. TRUNCAL NHEJ: Truncal SCNA changes in NHEJ pathway genes according to sample and fusion status

9. TRUNCAL + BRANCH HIPPO: SCNA changes in Hippo pathway genes according to sample and fusion status

10. TRUNCAL + BRANCH HR: SCNA changes in HR pathway genes according to sample and fusion status

11. TRUNCAL + BRANCH NHEJ: SCNA changes in NHEJ pathway genes according to sample and fusion status

12. SUMMARY: Two-by-two contingency tables of gene fusion positive/gene fusion negative tumours