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pone.0291402.s005.xlsx (10.35 kB)

Host prediction results for complete NCBI archaea virus genomes.

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posted on 2024-02-01, 18:47 authored by Alejandro Miguel Cisneros-Martínez, Ulises E. Rodriguez-Cruz, Luis D. Alcaraz, Arturo Becerra, Luis E. Eguiarte, Valeria Souza

It contains two tables. The first table shows the genus-level host predictions made by each tool for each archaea virus. False positive predictions are highlighted in red, while true positive predictions are highlighted in green. The second table shows the prediction statistics including precision, sensitivity and F1_score.

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    xlink "> dueshowed lower interqualitative validations relatedpublic reference databasesincluding custom dataimportant phenotypic featurehighly diverse communitycustom databases constructednew viruses mustpredicted host taxonomypredicted host biologyseveral bioinformatic toolsrecently developed virusprokaryotes inhabiting admetagenomic dataset derivedcharacterized using culturedependent methods runhost prediction toolsmexico best overall performancebioinformatic toolshost predictionperforming toolsdependent methodsculturable virusesad viruseshost pairsassociated hostamong hostspecific environmentsource environmentpredictions suggestnegas basinmethods basedmethod agreementknown geologicalindependent techniquesgreatest agreementfree methodsenormous diversitycorrect predictionscomparative evaluationbiological evolutionbased toolbased approachesarchaean domes76 %,5 %.046 virus

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