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IR8_blast2go_annot.annot (4.76 MB)

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TN1_blast2go_annot.annot (2.79 MB)

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TN1_maker_annotation.gff (45.17 MB)

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IR8_blast2go_gff.gff (23.41 MB)

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IR64_blast2go_annot.annot (3.58 MB)

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IR64_blast2go_gff.gff (18.17 MB)

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MH63_blast2go_annot.annot (6.97 MB)

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MH63_blast2go_gff.gff (34.86 MB)

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TN1_blast2go_gff.gff (13.98 MB)

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TN1_rice_v1.0.fasta (390.56 MB)

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10 files

Green Revolution rice genomes annotation files

Version 3 2022-03-11, 21:02

Version 2 2021-02-06, 18:30

Version 1 2021-01-23, 14:05

dataset

posted on 2022-03-11, 21:02 authored by Jerome PanibeJerome Panibe

Annotation of the Green Revolution-related cultivars Taichung Native 1 (TN1), IR8, MH63 and IR64.

Version 3 contains the complete set of files including the TN1 assembly. The unplaced scaffolds/contigs are not included in the TN1 fasta file available for download in NCBI. That's why I uploaded the complete set of chromosomes and unplaced scaffolds/contigs here.

Md5sum of the TN1 fasta file is ad12762b438db5d53ab912e262623aef .

If you want to use this data please cite as:

Panibe, Jerome P et al. “Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green Revolution.” Genomics vol. 113,4 (2021): 2656-2674. doi:10.1016/j.ygeno.2021.06.006