Genome assemblies from "The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative"

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posted on 2021-04-04, 19:34 authored by Josué Barrera-RedondoJosué Barrera-Redondo, Guillermo Sánchez-de la Vega, Jonás A. Aguirre-Liguori, Gabriela Castellanos-Morales, Yocelyn Gutierrez-Guerrero, Xitlali Aguirre-DuguaXitlali Aguirre-Dugua, Erika Aguirre-Planter, Maud I. Tenaillon, Rafael Lira-Saade, Luis E. Eguiarte

Chromosome-level genome assemblies of Cucurbita argyrosperma subsp. argyrosperma and Cucurbita argyrosperma subsp. sororia. These results are published in the paper "The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative" in Horticulture Research.

Each genome contains the following files:

- Genome_sequences -> Genome sequences in FASTA format of the nuclear genome (20 chromosomes + unscaffolded contigs), the mitochondrial genomes (fragmented) and the chloroplast genomes (complete circularized).

- Gene_annotation -> Gene models predicted within the nuclear genomes in GFF3 format.

- Gene_sequences -> FASTA sequences of the predicted gene models, including the amino acid sequences and the CDSs of the protein-coding genes, as well as the lincRNA transcripts in the case of C. argyrosperma subsp. argyrosperma.

- Functional_annotation -> InterProScan and Swiss-Prot annotations in tab-separated tables. The GO annotations for each gene are also included in tab-separated tables, which were extracted directly from the InterProScan results.

Funding

CONABIO KE004

CONABIO PE001

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Keywords

squash Population genomic analyses Mesoamerica Structural variants (SVs)introgression analyses Genomics

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CC BY 4.0

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