Genome assemblies from "The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative"
Each genome contains the following files:
- Genome_sequences -> Genome sequences in FASTA format of the nuclear genome (20 chromosomes + unscaffolded contigs), the mitochondrial genomes (fragmented) and the chloroplast genomes (complete circularized).
- Gene_annotation -> Gene models predicted within the nuclear genomes in GFF3 format.
- Gene_sequences -> FASTA sequences of the predicted gene models, including the amino acid sequences and the CDSs of the protein-coding genes, as well as the lincRNA transcripts in the case of C. argyrosperma subsp. argyrosperma.
- Functional_annotation -> InterProScan and Swiss-Prot annotations in tab-separated tables. The GO annotations for each gene are also included in tab-separated tables, which were extracted directly from the InterProScan results.