figshare
Browse
euraff_BCM_assembly_v1-0.tar.gz (216.89 MB)

Eurytemora affinis complex (Atlantic clade) genome assembly v1.0

Download (216.89 MB)
dataset
posted on 2024-02-13, 12:53 authored by Carol E. Lee, Richard A. Gibbs, Kim C. Worley, Shwetha C. Murali, Sandra L. Lee, Donna M. Muzny, Hsu Chao, Huyen Dinh, Harshavardhan Doddapaneni, Jiaxin Qu, Shannon Dugan-Perez, Yi Han, Stephen Richards

The Baylor College of Medicine has sequenced and annotated the Eurytemora affinis complex (Atlantic clade) genome as part of the i5k pilot project. This dataset presents the Eurytemora affinis complex (Atlantic clade) genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.


Resources in this dataset:

  • Resource Title: Eurytemora affinis complex (Atlantic clade) genome assembly v1.0.

    File Name: euraff_BCM_assembly_v1-0.tar.gz

    Resource Description:

    The attached tar.gz archive (EAFF_BCM_assembly_v1-0.tgz ) contains the following files:

    Eaff_11172013.contigs.fa.gz. This file contains the sequence information of the contigs of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly.

    Eaff_11172013.genome.fa. This file contains the sequence information of the scaffolds of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly.

    Eaff_11172013.genome.agp. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Lee, Carol Eunmi

Data contact email

carollee@wisc.edu

Publisher

Ag Data Commons

Temporal Extent Start Date

2016-01-01

Temporal Extent End Date

2017-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-69.21,48.01]},"type":"Feature","properties":{}}]}

Geographic location - description

Canada: Baie de L'Isle Verte, St. Lawrence estuary (salt marsh), Quebec

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genome; biotechnology; Eurytemora affinis; sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Lee, Carol E.; Gibbs, Richard A.; Worley, Kim C.; Murali, Shwetha C.; Lee, Sandra L.; Muzny, Donna M.; Chao, Hsu; Dinh, Huyen; Doddapaneni, Harshavardhan; Qu, Jiaxin; Dugan-Perez, Shannon; Han, Yi; Richards, Stephen (2021). Eurytemora affinis complex (Atlantic clade) genome assembly v1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1522903

Usage metrics

    Categories

    Keywords

    genome assemblysequence analysisEurytemora affinisEurytemora affinis complex (Atlantic clade)

    Licence

    CC BY-SA 4.0

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC