EEL human visual cortex 445 genes spatial RNA data

<p><strong>Raw RNA locations of a visual cortex human brain section produced by EEL FISH for 445 genes.</strong></p> <p><br></p> <p>RNA files are in the .parquet format which can be opened with FISHscale (https://github.com/linnarsson-lab/FISHscale) or any other parquet file reader (https://arrow.apache.org/docs/index.html)</p> <p><br></p> <p><strong>RNA .parquet files</strong></p> <p>Position and gene label for all RNA molecules. </p> <p>"c_px_microscope_stitched" contains X coordinates. </p> <p>"r_px_microscope_stitched" contians Y coordinates.</p> <p>The unit are pixels with a size of 0.18 micrometer. Multiply by 0.18 to get um scale.</p> <p><br></p> <p>"hamming_distance" is the hamming distance divided by the barcode length (16). The closer to 0 the better the barcode. </p> <p><br></p> <p><strong>Gene colors .pkl file</strong></p> <p>Pickled Python dictionary with gene colors used in the paper.</p>