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DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene

dataset
posted on 09.04.2018, 13:59 authored by Solenn MordretSolenn Mordret, Roberta Piredda, Daniel VaulotDaniel Vaulot, Marina Montresor, Wiebe H.C.F. Kooistra, Diana Sarno

Mordret, S., Piredda, R., Vaulot, D., Montresor, M., Kooistra, H. C. F. & Sarno, D. (under revision 2018). DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene. Molecular Ecology Resources.


Supplementary Material 1

List of 18S sequences included in DinoREF including annotations extracted from GenBank and literature sources (see “read-me” for details on metadata).

Supplementary Material 2

Fasta file (.fast) of sequences used to build DinoREF including the GenBank Accession number of each sequence.

Supplementary Material 3

DinoREF taxonomy file 1 (.taxonomy) with the taxonomy provided by GenBank for each sequence included in the database.

Supplementary Material 4

DinoREF taxonomy file 2 (.taxonomy) with the 8-level taxonomy for each sequence included in the database.

Supplementary Material 5

DinoREF taxonomy file 3 (.taxonomy) with the classification by Superclades for each sequence included in the database.

Supplementary Material 6

List of V4 unique sequences. When multiple 18S sequences share the same V4 region, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.

Supplementary Material 7

List of OTUs_98%. When multiple V4 sequences cluster in the same OTU at 98%, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.

Supplementary Material 8

Fasta file (.fasta) of sequences of early branching dinoflagellates.

Funding

SM has been supported by a PhD fellowship from Stazione Zoologica Anton Dohrn (SZN). This study was supported by the project FIRB Biodiversitalia (RBAP10A2T4) funded by the Italian Ministry of Education, University and Research (MIUR).

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