DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene
Mordret, S., Piredda, R., Vaulot, D., Montresor, M., Kooistra, H. C. F. & Sarno, D. (under revision 2018). DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene. Molecular Ecology Resources.
Supplementary Material 1
List of 18S sequences included in DinoREF including annotations extracted from GenBank and literature sources (see “read-me” for details on metadata).
Supplementary Material 2
Fasta file (.fast) of sequences used to build DinoREF including the GenBank Accession number of each sequence.
Supplementary Material 3
DinoREF taxonomy file 1 (.taxonomy) with the taxonomy provided by GenBank for each sequence included in the database.
Supplementary Material 4
DinoREF taxonomy file 2 (.taxonomy) with the 8-level taxonomy for each sequence included in the database.
Supplementary Material 5
DinoREF taxonomy file 3 (.taxonomy) with the classification by Superclades for each sequence included in the database.
Supplementary Material 6
List of V4 unique sequences. When multiple 18S sequences share the same V4 region, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.
Supplementary Material 7
List of OTUs_98%. When multiple V4 sequences cluster in the same OTU at 98%, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.
Supplementary Material 8
Fasta file (.fasta) of sequences of early
branching dinoflagellates.
Funding
SM has been supported by a PhD fellowship from Stazione Zoologica Anton Dohrn (SZN). This study was supported by the project FIRB Biodiversitalia (RBAP10A2T4) funded by the Italian Ministry of Education, University and Research (MIUR).
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- Microbial ecology
- Microbiology not elsewhere classified
- Genetics not elsewhere classified
- Plant cell and molecular biology
- Animal cell and molecular biology
- Evolutionary biology not elsewhere classified
- Molecular evolution
- Bioinformatics and computational biology not elsewhere classified
- Marine and estuarine ecology (incl. marine ichthyology)