posted on 2020-12-15, 19:07authored byBing Zhang, Anna Silverman, Saroja Bangaru, Douglas ArnesonDouglas Arneson, Sonya Dasharathy, Nghia Nguyen, Diane Rodden, Jonathan Shih, Atul Butte, Wael El-Nachef, Brigid Boland, Vivek Rudrapatna
Publicly available geocoded social determinants of health and mobility datasets used in the analysis of "Chronic Acid Suppression and Social Determinants of COVID-19 Infection".
These datasets are required for the analytical workflow shared on Github which demonstrates how the analysis in the manuscript was done using randomly generated samples to protect patient privacy.
zcta_county_rel_10.txt - Population and housing density from the 2010 decennial census. Obtained from: https://www2.census.gov/geo/docs/maps-data/data/rel/zcta_county_rel_10.txt
cre-2018-a11.csv - Community Resilience Estimates which is is the capacity of individuals and households to absorb, endure, and recover from the health, social, and economic impacts of a disaster such as a hurricane or pandemic. Data obtained from: https://www.census.gov/data/experimental-data-products/community-resilience-estimates.html
zcta_tract_rel_10.txt - Relationship between ZCTA and US Census tracts (used to map census tracts to ZCTA). Data obtained from: https://www.census.gov/geographies/reference-files/time-series/geo/relationship-files.html#par_textimage_674173622
mask-use-by-county.txt - Mask Use By County comes from a large number of interviews conducted online by the global data and survey firm Dynata at the request of The New York Times. The firm asked a question about mask use to obtain 250,000 survey responses between July 2 and July 14, enough data to provide estimates more detailed than the state level. Data obtained from: https://github.com/nytimes/covid-19-data/tree/master/mask-use
mobility_report_US.txt - Google mobility report which charts movement trends over time by geography, across different categories of places such as retail and recreation, groceries and pharmacies, parks, transit stations, workplaces, and residential. Data obtained from: https://github.com/ActiveConclusion/COVID19_mobility/blob/master/google_reports/mobility_report_US.csv
ACS2015_zctaallvars.csv - Social Deprivation Index is a composite measure of area level deprivation based on seven demographic characteristics collected in the American Community Survey (https://www.census.gov/programs-surveys/acs/) and used to quantify the socio-economic variation in health outcomes. Factors are: Income, Education, Employment, Housing, Household Characteristics, Transportation, Demographics. Data obtained from: https://www.graham-center.org/rgc/maps-data-tools/sdi/social-deprivation-index.html
Funding
Clinical and Translational Science Institute
National Center for Advancing Translational Sciences