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Dataset for "Limits and potential of combined folding and docking using PconsDock"

dataset
posted on 09.08.2021, 13:35 authored by Arne ElofssonArne Elofsson, Gabriele Pozzati, Wensi Zhu, Claudio BassotClaudio Bassot, John LambJohn Lamb, Petras Kundrotas
All scripts for predictions and analysis are available from https://github.com/ElofssonLab/bioinfo-toolbox/trRosetta/
Details for each run are available from https://github.com/ElofssonLab/bioinfo-toolbox/benchmark5/benchmark4.3/.
All models joined alignments, and evaluation results are available from a figshare repository[44].

The data is organized as follows

1) One diretora (N*/ as well as ./) contains all the results and data for one set of parameters
2) In each directory the following subdirectories are included
2a) seq/ (all sequences)
2b) pdb/ (all orginal pdb files)
2c) dimer/ all merged msa files
2d) pymodel/ all models generated and the measuremenst (in csv files) to evalute their performance.
3) In the director Figures/ all figures, scripts to generat them as well as summary of all predictions in a csv files is included

Funding

Towards a complete map of the transmembrane proteome in Yeast and E.Coli

Swedish Research Council

Find out more...

swedish e-science research council (SERC)

SNIC 2020/5-300

History

Publisher

Stockholm University

Contact email

arne@bioinfo.se