Data sets used in the manuscript "Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade"

Name: Data sets used in the manuscript "Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade"
Published: 2023-12-12T15:28:11+00:00
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Phylogenomics, Genetic code evolution, Tropidoatractidae, Palmarella, single cell transcriptomes, anaerobic ciliate

dataset

posted on 2023-12-12, 15:28 authored by Tomas PanekTomas Panek

18S rRNA dataset
single-gene datasets for phylogenomics
detected contaminant sequences and paralogs
concatenated phylogenomic matrices
transcriptome assemblies of newly sequenced taxa (cleaned by WinstonCleaner)
datasets used for analysis of stop codon identity in APM ciliates
datasets of identified 3´UTRs and mapped CDS onto respective transcriptomic contigs
output file of codetta